Koncept kontrole Listeria monocytogenes u pogonu za preradu mesa uz upotrebu sekvenciranja kompletnog genoma u cilju postizanja bezbednosti hrane
The concept of controlling Listeria monocytogenes In a meat processing plant using whole genome sequencing to achieve food safety
Autori
Zuber Bogdanović, IvanaOstala autorstva
Dimitrijević, MirjanaLakićević, Brankica
Teodorović, Vlado
Krnjaić, Dejan
Đorđević, Vesna
Doktorska teza (Objavljena verzija)
Metapodaci
Prikaz svih podataka o dokumentuApstrakt
L.monocytogenes, fakultativni intracelularni patogen, je široko rasprostranjena u razliĉitoj sveţoj i preraĊenoj hrani. Ovaj patogen je uzroĉnik listerioze, retkog ali ozbiljnog oboljenja ljudi i ţivotinja, izazvanog konzumacijom kontaminirane hrane. L.monocytogenes moţe da preţivi i raste u širokom rasponu razliĉitih uslova sredine u kojoj se nalazi, bilo da je ona prirodna ili sredina modifikovana aktivnošću ĉoveka. Usled sposobnosti da preţivi i raste na niskim temperaturama, u sredinama sa visokom koncentracijom soli, smanjenom pH i niskim vrednostima aktivnosti vode, ĉest je stanovnik pogona za proizvodnju hrane. Zbog svoje sveprisutnosti u ţivotnoj sredini, kontrola pojave L.monocytogenes u pogonima za proizvodnju hrane predstavlja ozbiljan izazov za sistem bezbednosti hrane. U cilju unapreĊenja sistema bezbednosti hrane, uporedo sa razvojem legislative i standarda, razvijaju se i nove metode i tehnike identifikacije mikroorganizama. Sekvenciranje kompletnog genoma (eng. Whole ge...nome sequencing - WGS) predstavlja ultimativnu metodu za ispitivanje prisustva patogena i otkrivanje njihovog porekla u hrani.Delikates proizvodi od mesa spremni za jelo, identifikovani su kao jedan od ĉestih izvora epidemija listerioze. Prisustvo L.monocyogenes u pogonu za proizvodnju tradicionalnih proizvoda od mesa u Crnoj Gori, ispitivano je tokom perioda od 2011. do 2014. godine. Za posmatrani period izolovano je 20 izolata L.monocytogenes iz proizvoda od mesa i pogona za njihovu proizvodnju koji su podvrgnuti molekularnoj karakterizaciji, serotipizaciji uz pomoć multipleks PCR-a i sekvencera nove generacije (eng. Next generation sequencing – NGS), utvrĊivanju potencijalne antimikrobne rezistencije na osnovu NGS podataka o prisustvu secifiĉnih gena rezistencije i skriningu na prisustvo odreĊenih markera rezistencije na dezinficijense...
L. monocytogenes, facultative intracellular pathogen, can be found in different types of raw and processed foods. This pathogen causes listeriosis, a rare but severe disease in humans and animals, which is spread primarily through the consumption of contaminated food. L. monocytogenes can survive and grow in a wide spectrum of environmental conditions, weather natural or habitats created by the human activity. Due to its ability to survive low temperatures, higher sodium nitrate concentrations, low pH and water activity, L. monocytogenes can frequently be found in the food processing environment. The ubiquitous nature of L. monocytogenes poses a significant encounter to its control in the food production environment, representing a great challenge for food safety. With the aim of improvement of the efficiency of the food safety systems, in parallel to the development of legislation and standards, the new methods and techniques for identification of microorganisms have been devised. Who...le genome sequencing (WGS) technique represents the ultimate method for pathogen detection and for determination of their origin in food products.Ready-To-Eat (RTE) delicatessen meat products have repeatedly been identified as a source of listeriosis outbreaks. The presence of Listeria monocytogenes was evaluated in the meat processing facility in Montenegro in the period from 2011 to 2014. In total, 20 isolates of L. monocytogenes, isolated from traditional meat products and environmental swabs, were subjected to molecular characterization, serotyping by both multiplex PCR and next generation sequencing (NGS), testing to their potential antimicrobial resistance (AMR) by extraction of specific genes from NGS data and screening for the presence of some disinfectant resistance markers...
Ključne reči:
Listeria monocytogenes / Listeria monocytogenes / listeriosis / Ready to eat food (RTE) / Whole genome sequencing (WGS) / antimicrobial resistence markers / biofilm / listerioza / hrana spremna za jelo (RTE) / sekvenciranje kompletnog genoma (WGS) / markeri antimikrobne rezistencije / biofilmIzvor:
Универзитет у Београду, 2020Izdavač:
- Универзитет у Београду, Факултет ветеринарске медицине
Finansiranje / projekti:
- Odabrane biološke opasnosti za bezbednost/kvalitet hrane animalnog porekla i kontrolne mere od farme do potrošača (RS-MESTD-Technological Development (TD or TR)-31034)
URI
http://eteze.bg.ac.rs/application/showtheses?thesesId=7665https://fedorabg.bg.ac.rs/fedora/get/o:22835/bdef:Content/download
http://vbs.rs/scripts/cobiss?command=DISPLAY&base=70036&RID=23768841
https://nardus.mpn.gov.rs/handle/123456789/17587
https://vet-erinar.vet.bg.ac.rs/handle/123456789/1882
Kolekcije
Institucija/grupa
Fakultet veterinarske medicineTY - THES AU - Zuber Bogdanović, Ivana PY - 2020 UR - http://eteze.bg.ac.rs/application/showtheses?thesesId=7665 UR - https://fedorabg.bg.ac.rs/fedora/get/o:22835/bdef:Content/download UR - http://vbs.rs/scripts/cobiss?command=DISPLAY&base=70036&RID=23768841 UR - https://nardus.mpn.gov.rs/handle/123456789/17587 UR - https://vet-erinar.vet.bg.ac.rs/handle/123456789/1882 AB - L.monocytogenes, fakultativni intracelularni patogen, je široko rasprostranjena u razliĉitoj sveţoj i preraĊenoj hrani. Ovaj patogen je uzroĉnik listerioze, retkog ali ozbiljnog oboljenja ljudi i ţivotinja, izazvanog konzumacijom kontaminirane hrane. L.monocytogenes moţe da preţivi i raste u širokom rasponu razliĉitih uslova sredine u kojoj se nalazi, bilo da je ona prirodna ili sredina modifikovana aktivnošću ĉoveka. Usled sposobnosti da preţivi i raste na niskim temperaturama, u sredinama sa visokom koncentracijom soli, smanjenom pH i niskim vrednostima aktivnosti vode, ĉest je stanovnik pogona za proizvodnju hrane. Zbog svoje sveprisutnosti u ţivotnoj sredini, kontrola pojave L.monocytogenes u pogonima za proizvodnju hrane predstavlja ozbiljan izazov za sistem bezbednosti hrane. U cilju unapreĊenja sistema bezbednosti hrane, uporedo sa razvojem legislative i standarda, razvijaju se i nove metode i tehnike identifikacije mikroorganizama. Sekvenciranje kompletnog genoma (eng. Whole genome sequencing - WGS) predstavlja ultimativnu metodu za ispitivanje prisustva patogena i otkrivanje njihovog porekla u hrani.Delikates proizvodi od mesa spremni za jelo, identifikovani su kao jedan od ĉestih izvora epidemija listerioze. Prisustvo L.monocyogenes u pogonu za proizvodnju tradicionalnih proizvoda od mesa u Crnoj Gori, ispitivano je tokom perioda od 2011. do 2014. godine. Za posmatrani period izolovano je 20 izolata L.monocytogenes iz proizvoda od mesa i pogona za njihovu proizvodnju koji su podvrgnuti molekularnoj karakterizaciji, serotipizaciji uz pomoć multipleks PCR-a i sekvencera nove generacije (eng. Next generation sequencing – NGS), utvrĊivanju potencijalne antimikrobne rezistencije na osnovu NGS podataka o prisustvu secifiĉnih gena rezistencije i skriningu na prisustvo odreĊenih markera rezistencije na dezinficijense... AB - L. monocytogenes, facultative intracellular pathogen, can be found in different types of raw and processed foods. This pathogen causes listeriosis, a rare but severe disease in humans and animals, which is spread primarily through the consumption of contaminated food. L. monocytogenes can survive and grow in a wide spectrum of environmental conditions, weather natural or habitats created by the human activity. Due to its ability to survive low temperatures, higher sodium nitrate concentrations, low pH and water activity, L. monocytogenes can frequently be found in the food processing environment. The ubiquitous nature of L. monocytogenes poses a significant encounter to its control in the food production environment, representing a great challenge for food safety. With the aim of improvement of the efficiency of the food safety systems, in parallel to the development of legislation and standards, the new methods and techniques for identification of microorganisms have been devised. Whole genome sequencing (WGS) technique represents the ultimate method for pathogen detection and for determination of their origin in food products.Ready-To-Eat (RTE) delicatessen meat products have repeatedly been identified as a source of listeriosis outbreaks. The presence of Listeria monocytogenes was evaluated in the meat processing facility in Montenegro in the period from 2011 to 2014. In total, 20 isolates of L. monocytogenes, isolated from traditional meat products and environmental swabs, were subjected to molecular characterization, serotyping by both multiplex PCR and next generation sequencing (NGS), testing to their potential antimicrobial resistance (AMR) by extraction of specific genes from NGS data and screening for the presence of some disinfectant resistance markers... PB - Универзитет у Београду, Факултет ветеринарске медицине T2 - Универзитет у Београду T1 - Koncept kontrole Listeria monocytogenes u pogonu za preradu mesa uz upotrebu sekvenciranja kompletnog genoma u cilju postizanja bezbednosti hrane UR - https://hdl.handle.net/21.15107/rcub_nardus_17587 ER -
@phdthesis{ author = "Zuber Bogdanović, Ivana", year = "2020", abstract = "L.monocytogenes, fakultativni intracelularni patogen, je široko rasprostranjena u razliĉitoj sveţoj i preraĊenoj hrani. Ovaj patogen je uzroĉnik listerioze, retkog ali ozbiljnog oboljenja ljudi i ţivotinja, izazvanog konzumacijom kontaminirane hrane. L.monocytogenes moţe da preţivi i raste u širokom rasponu razliĉitih uslova sredine u kojoj se nalazi, bilo da je ona prirodna ili sredina modifikovana aktivnošću ĉoveka. Usled sposobnosti da preţivi i raste na niskim temperaturama, u sredinama sa visokom koncentracijom soli, smanjenom pH i niskim vrednostima aktivnosti vode, ĉest je stanovnik pogona za proizvodnju hrane. Zbog svoje sveprisutnosti u ţivotnoj sredini, kontrola pojave L.monocytogenes u pogonima za proizvodnju hrane predstavlja ozbiljan izazov za sistem bezbednosti hrane. U cilju unapreĊenja sistema bezbednosti hrane, uporedo sa razvojem legislative i standarda, razvijaju se i nove metode i tehnike identifikacije mikroorganizama. Sekvenciranje kompletnog genoma (eng. Whole genome sequencing - WGS) predstavlja ultimativnu metodu za ispitivanje prisustva patogena i otkrivanje njihovog porekla u hrani.Delikates proizvodi od mesa spremni za jelo, identifikovani su kao jedan od ĉestih izvora epidemija listerioze. Prisustvo L.monocyogenes u pogonu za proizvodnju tradicionalnih proizvoda od mesa u Crnoj Gori, ispitivano je tokom perioda od 2011. do 2014. godine. Za posmatrani period izolovano je 20 izolata L.monocytogenes iz proizvoda od mesa i pogona za njihovu proizvodnju koji su podvrgnuti molekularnoj karakterizaciji, serotipizaciji uz pomoć multipleks PCR-a i sekvencera nove generacije (eng. Next generation sequencing – NGS), utvrĊivanju potencijalne antimikrobne rezistencije na osnovu NGS podataka o prisustvu secifiĉnih gena rezistencije i skriningu na prisustvo odreĊenih markera rezistencije na dezinficijense..., L. monocytogenes, facultative intracellular pathogen, can be found in different types of raw and processed foods. This pathogen causes listeriosis, a rare but severe disease in humans and animals, which is spread primarily through the consumption of contaminated food. L. monocytogenes can survive and grow in a wide spectrum of environmental conditions, weather natural or habitats created by the human activity. Due to its ability to survive low temperatures, higher sodium nitrate concentrations, low pH and water activity, L. monocytogenes can frequently be found in the food processing environment. The ubiquitous nature of L. monocytogenes poses a significant encounter to its control in the food production environment, representing a great challenge for food safety. With the aim of improvement of the efficiency of the food safety systems, in parallel to the development of legislation and standards, the new methods and techniques for identification of microorganisms have been devised. Whole genome sequencing (WGS) technique represents the ultimate method for pathogen detection and for determination of their origin in food products.Ready-To-Eat (RTE) delicatessen meat products have repeatedly been identified as a source of listeriosis outbreaks. The presence of Listeria monocytogenes was evaluated in the meat processing facility in Montenegro in the period from 2011 to 2014. In total, 20 isolates of L. monocytogenes, isolated from traditional meat products and environmental swabs, were subjected to molecular characterization, serotyping by both multiplex PCR and next generation sequencing (NGS), testing to their potential antimicrobial resistance (AMR) by extraction of specific genes from NGS data and screening for the presence of some disinfectant resistance markers...", publisher = "Универзитет у Београду, Факултет ветеринарске медицине", journal = "Универзитет у Београду", title = "Koncept kontrole Listeria monocytogenes u pogonu za preradu mesa uz upotrebu sekvenciranja kompletnog genoma u cilju postizanja bezbednosti hrane", url = "https://hdl.handle.net/21.15107/rcub_nardus_17587" }
Zuber Bogdanović, I.. (2020). Koncept kontrole Listeria monocytogenes u pogonu za preradu mesa uz upotrebu sekvenciranja kompletnog genoma u cilju postizanja bezbednosti hrane. in Универзитет у Београду Универзитет у Београду, Факултет ветеринарске медицине.. https://hdl.handle.net/21.15107/rcub_nardus_17587
Zuber Bogdanović I. Koncept kontrole Listeria monocytogenes u pogonu za preradu mesa uz upotrebu sekvenciranja kompletnog genoma u cilju postizanja bezbednosti hrane. in Универзитет у Београду. 2020;. https://hdl.handle.net/21.15107/rcub_nardus_17587 .
Zuber Bogdanović, Ivana, "Koncept kontrole Listeria monocytogenes u pogonu za preradu mesa uz upotrebu sekvenciranja kompletnog genoma u cilju postizanja bezbednosti hrane" in Универзитет у Београду (2020), https://hdl.handle.net/21.15107/rcub_nardus_17587 .